Inferring diversity dynamics

R codes corresponding to the inference approach developed in our PNAS 2011 paper are available as supplementary material on the PNAS website. They are also available upon request.

 

R codes that fit various models of diversification to phylogenies of extant taxa using the coalescent approach developed in our PloS Biology 2010 paper. If you have comments or troubles, please contact me. Please read the paper and the comments in the source code first!

 

Spatial patterns of phylogenetic diversity

Source Python code for phylogenetic analysis in our Ecology Letters 2011 paper, including generalized version of the BLADJ node age assignment algorithm and sensitivity analyses, is available on Dylan Schwilk’s website. If you have comments or troubles, please contact me or Dylan.